Vlajdermen
Arcane
The only example I can think of is Supreme Commander (and presumably, by extension, Total Annihilation, which I haven't played yet). The ships handle how they should, and the scale is large enough to allow for that. The variety of ships is good, the factional differences made it interesting, a lot of thought went into their capabilities and armaments, and there's a good balance of simluating real-life warships to spicing them up with sci-fi ideas. What else should I play if I enjoyed that?