There is no partially indoctrinated, either you are or you arent. shepard wasnt when he found the IA, reapers were trying since back in arrival tho.
Where do i get what i know about indoctrination? the dictionary mostly. Where does IT come from? art direction, subtle hints and plot holes the size of a mountain.
Jick_Magger_101
1) the option to refuse is there because indoctrination is about your will breaking. If shaprd either resists and goes for destruction, or completely refuses and rather die than actually die than comply, in both those cases the reapers simply failed to indoctrinate him. Harbringer had a personal vendetta against you, he wanted to break you, he couldnt, its obviously frustrating. i know the last part is weak but it has been established before. If harbinger wanted you dead, he had a of opportunities to kill you, easily, there is a reason he didnt take any of them.
2) and he ended up in the rubble in london when he was suposedly in the citadel because of space magic...? im not buying it. and how can it be a happy ending if shepard just raped the whole galaxy with techno magic or became the new TIM wannabe?
3) the jap super dude is indoctrinated, shepards mind is still holding strong. Plus even the game states that VIs failed to detect indoctrinated protheans in the past, 50k years ago. and were buttfucked by infiltrated indoctrinated protheans.
Anyway, i have no doubt in my mind it was their intent to make it the IT the real thing and weeks down the line release a free dlc with the actual ending of the game continuing right after the final moments of the original game to "blow everyones minds". They werent counting on people being offended at the stupidest non ending in the story of video games from the company which had, according the them "THE BEST WRITING EVAZZZ". PR paniqued, and etc, etc etc.
tuluse mostly killing time here.